Fjjfjcjcfj in that thread nailed it:
The Daniels paces can be wildly inaccurate for distances not near what you are basing the VDOT on.
Example: Guy runs 17:00 which gives him a VDOT of 57 (May not be true but I don't have the table on hand)
That guy gets a "pace" from mile up to easy pace based on his VDOT number from that 5k performance. The problem with this is that it assumes he has a certain exact level of both speed and endurance. This is almost never the case with young athletes. They almost always have more speed than endurance, sometimes greatly so.
Now his threshold, tempo, moderate, and easy paces are too fast, and his intervals and reps are too slow.
Point 1:
The reason 400/800/1600 guys struggle to hit their T pace in long reps is because they aren't running T pace as defined physiologically based on mmol. They likely are underdeveloped aerobically so the tables overestimate (too fast) their paces for longer distances. In HS we'd run a 10 mile time trial part of a fundraiser. It wasn't supposed to be race but would turn into an all out effort each year regardless. The year when I started off the season in 16:30 5k shape we just managed to dip under 1 hr for 60 minutes! That would put our T-pace at 6:00 whereas daniels table who put it at 5:38 using 15k race pace! I also remember our young new coach taking us for our first tempo run. I can still remember the workout because it was so hard. He was incredibly confused as to why we couldn't hit the T pace that his tables were prescribing.
Occam's razor applies nicely here. The knee jerk reaction seems to blame the inability to run continuous T-pace on mental weakness, something intangible and unobservable; however, there's obvious explanation: young runners, middle distance runners are underdeveloped aerobically and therefore the prescribed paces from tables and formulas for longer efforts are too fast.
Point 2:
Intervals for younger athletes at T pace seems like a nice idea on paper, but as stated (wisely by smoove) in that thread, 400s at T pace are easy to "cheat on." This leads to a general principle that the more rest you introduce into cruise/threshold running the easier it is to cheat on. 400s>miles>...>continous (in order of easiest to hardest to cheat on). So while the conventional wisdom seems to be to use intervals at T pace for those who can't handle continuous T pace, I'd argue intervals at T pace should only be reserved for the most experienced athletes who know the feeling of T running well. For everyone else adding in rest only complicates the picture, and you'd be better off slowing down the paces until the athlete gets the effort right. After that the goal should be to gradually ramp up the pace of the T workouts. Aerobic development takes time but ideally the T workout pace should eventually catch up to the predicted estimate from the tables.