There are legitimate reasons to land humans on Phobos prior to Mars though Phobos is not the permanent destination.
Long story short, if we are to start a human colony on Mars, then it would be wise to send some robots there first capable of doing a lot of the groundwork.
Think of a souped-up version of the Curiosity Rover that is current there. These would be largely to do some heavy duty construction work so that the first humans to land on Mars don't have to start their colony from scratch.
Anyway...these construction bots would not be independent, they would be run by humans, remotely. A project of this scoop could not be controlled from Earth, however, because there is anywhere from a 4 to 20 minute lag in Earth-Mars communication depending on the relative position of the two planets.
So, we would need a human crew to be in the vicinity. Staying in orbit means there is no gravity at all, which is not ideal for the astronauts, especially considering the time they would already have spent in zero-G on the flight to Mars. Phobos is very close to Mars, the closest moon to a planet that we know of, so it would have a very short communication lag. It also orbits Mars quickly so it is a good point to have a base to monitor/observe a large chunk of the surface in a small time scale.
Since Phobos has a small escape velocity as previously mentioned in this post, it would not take much for the human crew to blast back off of it and into space to return to Earth.
Possibly we could send a crew to Mars to oversee the initial construction of a Mars base from a temporary home on Phobos. This crew would return to Earth and further missions would continue the construction and eventual settlement. Mars gravity is a lot higher than Phobos, or even our own Moon, so it would take a pretty sophisticated spaceship that could blast off from Earth, land on Mars and then blast back off of Mars and return to Earth.
That's why most of the current plans assume that the first humans to settle on Mars will not be coming back. Eventually two way travel could be developed, but the first crew will likely be flying on a one-way ticket.