I'm surprised that no one has mentioned this. Pretty impressive list:
The all-time collegiate list (' = foreigner):
1. 3:35.30 Sydney Maree' (Villanova) 6/06/81
2. 3:35.79 Abdi Bile' (George Mason) 6/06/87
3. 3:35.84 Joe Falcon (Arkansas) 4/16/88
Brian Hyde (William & Mary) 5/13/95
5. 3:36.25 Miles Batty (BYU) 4/15/11
6. 3:36.48 Joaquim Cruz' (Oregon) 6/02/84
7. 3:36.62 Kevin Sullivan' (Michigan) 5/15/98
8. 3:36.92 Matthew Centrowitz (Oregon) 5/02/09
9. 3:37.01 Eamonn Coghlan' (Villanova) 6/05/76
10. 3:37.05 Bryan Berryhill (Colorado St) 6/02/01
The list does not include times from outside the collegiate season.