Avowed Daniels guy here. I have been happy with my performances using Marathon Training Plan A from the 2nd edition as my base plan, modifying it a bit to accommodate work, family, travel and race scheduling issues, to allow for a bit more of a taper, etc.
I think most would say that Daniels misses some of the "in between paces." Lots of work at threshold pace, a bit of work at marathon pace, lots of easy distance pace, but very little work in between. For those who like a Canova style in particular, this is very problematic as they like to come in at marathon pace from both sides of that pace, with some work at paces between easy distance and marathon pace and some work between threshold and marathon pace.
Relatedly, on a more micro level, many people like Canova style alternations, where you run continuously, but alternate between paces above and below a goal pace, or use marathon pace as a recovery pace, getting used to that pace as a "comfortable" pace.
I would say that others might also suggest that Daniels just doesn't do enough work at marathon pace, and would prefer more work at that pace, particularly at the end of some long runs.
Personally, I have no problem missing out on the in-between paces at all. The alternations do seem interesting to me, and I think they can fit into a Daniels style world.
The one thing that I tinker with the most, a bit more for people I coach than for myself, is getting more work in at marathon pace to build some muscle memory at that pace and to get some mental comfort as that pace becomes more manageable during the cycle. I don't think it is hugely physiologically important, but I do think it is good for the psyche for many runners.