It's a fair question. I think that one of the purposes of a MP or high-end aerobic run is increased economy at that pace, and that "baking in" increased economy at ALL faster paces, even slower ones (if that makes sense) is a good thing. It's surely not good to make all your easy runs into MP runs; that creates incrementally increased stress over time and eventually it'll catch up to you, sometimes in the week or two before your goal race.
But MP, compared with easy pace, not only demands a longer stride but also makes increased demands on your diaphragm. It's at or above the ventilatory threshold; your breathing rate increases--in my case, from 3/3 to 3/2--and your breaths deepen. It's good to hard-wire in those changes; make yourself comfortable with them.
To me, substituting high-end aerobic running for some easy runs creates diversity of running paces, and diversity is good. It makes you incrementally more relaxed at those paces, and it may even teach you something about stride rate, breathing rate and depth, etc.
I run many of my long runs (13-14 miles) easy on the way out and MP on the way back. In Michael Sandrock's book, he calls this "banging it out" and claims that Mark Wetmore encourages his runners to do their long runs this way. Works for me. Same for Lydiard's 22-miler over hills in Waiaturua (sp?). Warm into it, slowly open up, get into the groove, and bang it out.